Previously, the SELECT was legal due to the implicit grouping of t1,t2 as (t1,t2). Now the JOIN takes precedence, so the operands for the ON clause are t2 and t3. Because t1.i1 is not a column in either of the operands, the result is an Unknown column 't1.i1' in 'on clause' error. To allow the join to be processed, group the first two tables explicitly with parentheses so that the operands for the ON clause are (t1,t2) and t3:

SELECT * FROM (t1, t2) JOIN t3 ON (t1.i1 = t3.i3);
http://dev.mysql.com/doc/refman/5.1/en/join.html