Sì, si parla della configurazione di MYSQL per renderlo sensitive - insensitive.

In un articolo si parla di:

However, this same statement is permitted on Windows. To avoid problems caused by such differences, it is best to adopt a consistent convention, such as always creating and referring to databases and tables using lowercase names. This convention is recommended for maximum portability and ease of use.“

http://dev.mysql.com/doc/refman/5.0/...nsitivity.html

Possibile che la soluzione sia modificare nomi delle tabelle?