Ho fatto una prova con la stessa quantità di dati per tabella e funziona ma a me serve modificare come indicato sopra, il codice è un po' incasinato comunque lo posto

La struttura sarebbe

Codice PHP:
<?
echo'<table width="100%">    <tr>
                <td width="30%">';
                echo '<table class="td1" width="100%">';
                $q01 = mysql_query("Select ...") or die(mysql_error());
                while ($rs01 = mysql_fetch_array($q01)){
                echo'    <tr>
                            <td class="td1" width="20%"><font color="white">'.$rs01['E'].'</td>
                            <td class="td1" width="20%"><font color="white">'.$rs01['D'].'</td>
                            <td class="td1" width="20%"><font color="white">'.$rs01['C'].'</td>
                            <td class="td1" width="20%"><font color="white">'.$rs01['B'].'</td>
                            <td class="td1" width="20%"><font color="white">'.$rs01['A'].'</td>
                        </tr>';
                }
    echo '        </table></td>
                <td class="td1" width="30%">';
                echo '<table width="100%">';
                $q02 = mysql_query("Select ...") or die(mysql_error());
                while ($rs02 = mysql_fetch_array($q02)){
                echo '    <tr>
                            <td class="td1" width="20%"><font color="white">'.$rs02['F'].'</td>
                            <td class="td1" width="20%"><font color="white">'.$rs02['D'].'</td>
                            <td class="td1" width="20%"><font color="white">'.$rs02['Z'].'</td>
                            <td class="td1" width="20%"><font color="white">'.$rs02['Y'].'</td>
                            <td class="td1" width="20%"><font color="white">'.$rs02['X'].'</td>
                        </tr>';
                }
    echo '        </table></td>
                <td class="td1" width="30%">';
                echo '<table width="100%">
                        <tr>
                            <td class="td1" width="20%">EEEEE</td>
                            <td class="td1" width="20%">BBBBBB</td>
                            <td class="td1" width="20%">CCCCCCC</td>
                            <td class="td1" width="20%">AAAAAi</td>
                            <td class="td1" width="20%">XXXXX</td>
                        </tr>
                     </table>';
    echo '        </td>
                </tr>
        </table>';
?>