Sto utilizzando le librerie di Bio4j, immaginate che io abbia un codice simile a questo:
Come potete vedere ci sono queste istruzioni:codice:package com.era7.bioinfo.bio4j.codesamples; import com.era7.bioinfo.bio4j.neo4j.model.nodes.ProteinNode; import com.era7.bioinfo.bio4j.neo4j.model.util.Bio4jManager; import com.era7.bioinfo.bio4j.neo4j.model.util.NodeRetriever; /** * * Retrieves basic gene information for a protein * * @author Pablo Pareja Tobes <ppareja@era7.com> */ public class GetGenesInfo { /** * @param args Just two arguments (DB folder and protein accession) */ public static void main(String[] args) { if (args.length != 2) { System.out.println("The program expects two parameters: \n" + "1. Bio4j DB folder\n" + "2. Protein accession\n"); } else { String inputSt = args[1]; Bio4jManager manager = null; try { //--creating manager and node retriever---- manager = new Bio4jManager(args[0]); NodeRetriever nodeRetriever = new NodeRetriever(manager); //-------------------------------------------------------------- //-----retrieving protein by its accession--------- ProteinNode protein = nodeRetriever.getProteinNodeByAccession(inputSt); //checking there's a protein with the accession provided... if (protein == null) { System.out.println("There's no protein with the accession " + inputSt); } else { System.out.println("Protein found: \n" + inputSt); //----getting gene names----- String[] geneNames = protein.getGeneNames(); System.out.println("Gene names: "); for (String string : geneNames) { System.out.println(string + ","); } } //-------------------------------------------------------------- } catch (Exception e) { //deal somehow with the exception } finally { //---closing the manager---- manager.shutDown(); } } } }
Il problema č che io non riesco a trovare la cartella del database....potreste provare a vedere se capite qualcosa?codice:if (args.length != 2) { System.out.println("The program expects two parameters: \n" + "1. Bio4j DB folder\n" + "2. Protein accession\n"); } else {
Bio4j č scaricabile da qui:
https://github.com/bio4j
Ho scaricato dal primo link.

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